Clustering The Sequences

Fuh!
It had been a long time I didn't update this blog.
:D
I like to share one of bioinformatics tool which is can be used to cluster the sequence.
Normally, biologist cluster the sequences or genomes to analyze or define the family any kind of organism.
By clustering, researcher can get what information they want etc : phylogenetic, relationships of gene and proteins.
Use this tools : BLASTClust (Web based) or you can go to this link ~NCBI BLASTClust (client server)
NCBI BLASTClust~> It is better if you install in Linux Platform :)
So..enjoy your clustering :)

BLASTClust(Web based)

Result after clustering the protein sequences

Technology Make It Easy !

You have a lot of dna sequence to translate to acid amino sequence.
It is cool when you have something can minimize your translation.
So, here a translator can help you translate batch of dna sequence in once time.
Go to this page.
















Another cool things :)
Batch BLAST which you can use to blast a batch of sequences.
The results depend on your file size.
A small size can take a few minutes while a big size may be can take an hour.
But it is still can help you to work smart.











BasicallyI'm using these 2 tools to construct my EST database.
I have a thousand of sequences to translate and mine the data.
Hmm..later post I will talk about EST database, k.